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Neuroscientists want to inspect the data their simulations are producing while these are still running. This will on the one hand save them time waiting for results and therefore insight. On the other, it will allow for more efficient use of CPU time if the simulations are being run on supercomputers. If they had access to the data being generated, neuroscientists could monitor it and take counter-actions, e.g., parameter adjustments, should the simulation deviate too much from in-vivo observations or get stuck.

As a first step toward this goal, we devise an in situ pipeline tailored to the neuroscientific use case. It is capable of recording and transferring simulation data to an analysis/visualization process, while the simulation is still running. The developed libraries are made publicly available as open source projects. We provide a proof-of-concept integration, coupling the neuronal simulator NEST to basic 2D and 3D visualization.

Being able to inspect neuronal network simulations while they are running provides new research strategies to neuroscientists as it enables them to perform actions like parameter adjustments in case the simulation performs unexpectedly. This can also save compute resources when such simulations are run on large supercomputers as errors can be detected and corrected earlier saving valuable compute time. This talk presents a prototypical pipeline that enables in-situ analysis and visualization of running simulations.

The bachelor thesis’ aim was to develop a framework allowing to design and conduct virtual-reality-based user studies gaining insight into the concept of personal space.